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Cell Biology

“Protein Powerhouses: How Different Protein Sources Shape the Gut Microbiome”

Protein sources appear to have major effects on both the population and function of the mouse gut microbiome.

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A groundbreaking study by researchers from North Carolina State University has revealed that the source of protein in an animal’s diet can significantly impact the composition and function of the gut microbiome. This tiny ecosystem within our digestive system plays a crucial role in our overall health, influencing various aspects such as digestion, immune response, and even brain function.

The study focused on mice fed diets containing just one type of protein source for a week at a time. The researchers were particularly interested in examining how different proteins (e.g., egg whites, brown rice, soy, yeast) affected the gut microbiome. Using advanced techniques such as integrated metagenomics-metaproteomics, they found that the mice’s gut microbiome changed dramatically with each change in protein source.

The biggest functional effects were observed with diets containing brown rice, yeast, and egg whites. The study showed that these proteins had a significant impact on amino acid metabolism and complex sugar degradation, which can have implications for gut health.

For instance, the researchers found that mice fed diets high in amino acids (found in egg whites) tended to break down those proteins instead of producing their own amino acids from scratch. This process, known as amino acid degradation, can lead to the production of toxins and affect the gut-brain axis.

The study also highlighted the importance of glycans, long chains of sugars attached to dietary proteins, in changing gut microbiome function. Multiple protein sources (soy, rice, yeast, egg white) caused microbes in the gut to alter their enzyme production, sometimes substantially.

One particular bacterium, found in mice fed an egg-white diet, took over and activated enzymes that break down glycans, similar to those produced by bacteria found in mucin, a substance lining the gut. This could lead to damage of the intestinal lining and negative impacts on gut health.

The researchers emphasize that their study lays the groundwork for future investigations into how different protein sources affect the gut microbiome. They note that while their artificial diets may amplify results, they have shown significant effects in mice fed mixed protein diets.

This research has important implications for our understanding of how food influences gut health and overall well-being. By examining the complex interactions between dietary proteins, microbes, and gut function, we can gain insights into preventing and treating gastrointestinal diseases that affect millions worldwide.

Cell Biology

A 600-Million-Year-Old Body Blueprint Uncovered in Sea Anemones

Sea anemones may hold the key to the ancient origins of body symmetry. A study from the University of Vienna shows they use a molecular mechanism known as BMP shuttling, once thought unique to bilaterally symmetrical animals like humans, insects, and worms. This surprising discovery implies that the blueprint for forming a back-to-belly body axis could date back over 600 million years, to a common ancestor of cnidarians and bilaterians.

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A new study from the University of Vienna has made a groundbreaking discovery in the field of developmental biology. Researchers have found that sea anemones, traditionally considered radially symmetric animals, use a molecular mechanism known as BMP shuttling to pattern their back-to-belly body axis. This finding suggests that bilateral symmetry, which characterizes a vast group of animals including vertebrates, insects, and worms, may have evolved much earlier than previously assumed.

BMP shuttling is a signaling system involving Bone Morphogenetic Proteins (BMPs) and their inhibitor Chordin. In bilaterian animals, this mechanism creates a gradient of BMP activity across the embryo, allowing cells to detect and adopt different fates depending on BMP levels. The study’s findings indicate that sea anemones use BMP shuttling in a similar manner, with cells expressing different fates based on BMP signaling.

To investigate whether sea anemones indeed use BMP shuttling, researchers blocked Chordin production in the embryos of the model sea anemone Nematostella vectensis. Without Chordin, BMP signaling ceased, and the formation of the second body axis failed. However, when Chordin was reintroduced into a small part of the embryo, BMP signaling resumed – but only with a diffusible form of Chordin, which acts as a BMP shuttle.

The presence of BMP shuttling in both cnidarians and bilaterians suggests that this molecular mechanism predates their evolutionary divergence some 600-700 million years ago. The study’s findings open up exciting possibilities for rethinking how body plans evolved in early animals, and may have significant implications for our understanding of the evolution of bilateral symmetry.

The research was supported by the Austrian Science Fund (FWF), grants P32705 and M3291.

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Biology

Unraveling Microtubule Mysteries: Scientists Crack Code on Cellular Scaffolding Secrets

Scientists found out how naturally unstable filaments decide whether to grow or to shorten.

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A groundbreaking study has shed new light on the fundamental mechanisms governing microtubule growth within cells. Researchers from Queen Mary University of London and the University of Dundee have made a significant breakthrough by discovering that the ability of tubulin proteins at microtubule ends to connect with each other sideways determines whether a microtubule elongates or shortens.

Microtubules are crucial protein structures that form the internal skeleton of cells, providing structural support and generating dynamic forces that push and pull. These tiny filaments constantly assemble and disassemble by adding or removing tubulin building blocks at their ends. However, the precise rules dictating whether a microtubule grows or shrinks have long remained a mystery due to the complexity and miniature size of their ends.

The collaborative research team has cracked part of this code using advanced computer simulations coupled with innovative imaging techniques. This interdisciplinary approach has allowed them to address this complex biological question from a fresh perspective, bridging physics and biology.

Dr. Vladimir Volkov, co-lead author from Queen Mary University of London, explained the significance of their findings: “Understanding how microtubules grow and shorten is very important – this mechanism underlies division and motility of all our cells. Our results will inform future biomedical research, particularly in areas related to cell growth and cancer.”

Dr. Maxim Igaev, co-lead author from the University of Dundee, highlighted the power of their interdisciplinary approach: “Bridging physics and biology has allowed us to address this complex biological question from a fresh perspective. This synergy not only enriches both fields but also paves the way for discoveries that neither discipline could achieve in isolation.”

This exciting research deepens our understanding of fundamental cellular processes and opens potential new avenues for biomedical research, particularly in areas concerning cell proliferation and the development of treatments for diseases like cancer.

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Biotechnology

Unlocking the Cell’s Energy Hub: Scientists Reveal How ATP Enters the Endoplasmic Reticulum

A team of scientists has answered a long-standing question in cell biology, uncovering how the cell’s main energy currency, ATP, is transported into the endoplasmic reticulum (ER). Disrupted energy transport could affect diseases such as type 2 diabetes, cancer, and neurodegenerative disorders. The study confirms that the transporter protein SLC35B1 is the key gateway for ATP entry into the ER.

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The inner workings of cells have long been a subject of scientific inquiry, and researchers at Stockholm University’s SciLifeLab have made a groundbreaking discovery. A team led by Professor David Drew has uncovered how the cell’s main energy currency, ATP (adenosine triphosphate), is transported into the endoplasmic reticulum (ER), the cell’s primary “shipping port” for protein and lipid packaging.

The ER plays a vital role in checking protein quality and facilitating their transport within the cell. For these processes to occur efficiently, energy in the form of ATP is required. Despite decades of research on ER function, the question of how ATP reaches the inside of the ER had remained unclear – until now.

Professor Drew’s team confirmed that the transporter protein SLC35B1 is the key gateway for ATP entry into the ER. This discovery was made possible through a combination of biochemical and structural validation, including the use of cryo-electron microscopy (cryo-EM) to visualize SLC35B1 in multiple conformations.

The study published in Nature reveals the first structural and mechanistic insight into how ATP enters the endoplasmic reticulum using the transporter protein SLC35B1. The ER is the cell’s main “shipping port” that packages proteins and lipids, checks their quality, and facilitates their transport within the cell.

“This discovery has broad implications for human health,” says Professor Drew. “Disrupted ER activity is linked to diseases such as type 2 diabetes, cancer, and neurodegenerative disorders, where ER stress and protein misfolding play central roles.” With a detailed molecular blueprint now available, SLC35B1 presents a promising target for future drug development.

Understanding how energy is delivered into the ER gives researchers powerful new ways to tackle these diseases. Modulating SLC35B1 activity could become a new strategy for restoring ER balance in disease states.

Professor Drew’s team has already begun screening for small molecules that modulate SLC35B1 function, with the goal of developing targeted therapies to either enhance or inhibit ATP transport when needed. This research holds great promise for improving human health and unlocking new therapeutic opportunities for diseases linked to ER dysfunction.

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