Connect with us
We’re experimenting with AI-generated content to help deliver information faster and more efficiently.
While we try to keep things accurate, this content is part of an ongoing experiment and may not always be reliable.
Please double-check important details — we’re not responsible for how the information is used.

Developmental Biology

“Evolution of Defense: How Cells Adapt to Malicious Jumping Genes”

Adverse genetic mutations can cause harm and are due to various circumstances. ‘Jumping genes’ are one cause of mutations, but cells try and combat them with a specialized RNA called piRNA. Researchers have identified how the sites responsible for piRNA production evolve effective behaviors against jumping genes. This research could lead to downstream diagnostic or therapeutic applications.

Avatar photo

Published

on

The article you provided delves into the complex world of genetic mutations, where changes in an organism’s genes can lead to both beneficial traits and diseases. Amidst this intricate landscape, researchers from the University of Tokyo and their collaborators have made a groundbreaking discovery – they’ve identified how cells adapt to combat malicious jumping genes.

Jumping genes, also known as transposons or transposable elements (TEs), are snippets of DNA that can insert themselves into random locations along the genome, causing disruptions. To counter this threat, organisms produce specialized RNAs called piRNAs, which silence these jumping genes. However, until now, the process behind piRNA production and its widespread conservation across species remained unclear.

Professor Yukihide Tomari from the University of Tokyo’s Institute for Quantitative Biosciences has shed light on this mystery. “PIWI-interacting RNAs not only silence TEs but are also amplified during the silencing process,” he explains. This amplification occurs through a process called the ping-pong pathway, where piRNA targets and cuts up the TE, creating new piRNA from the cut-up fragments. This ensures a set of protective piRNAs is robustly maintained.

But that’s not all – Tomari and his team have also discovered that the sites on TEs targeted by piRNAs are not fixed, but rather fluctuate over time. This competition between these sites means that when one site becomes inefficient, neighboring sites can emerge and replace it, potentially improving overall efficiency. In other words, piRNA rapidly catches up with any changes in the TEs, keeping them subdued.

This unique property of piRNA was confirmed not only in silkworms but also in flies and mice. The team’s findings have significant implications for medical research, especially since piRNA malfunctions have been linked to conditions such as human male infertility. These results open the door to potential diagnostic and therapeutic strategies against unwanted genetic mutations.

The discovery of this mechanism was made almost by chance due to the lockdowns during the pandemic. Instead of carrying on experimental work as usual, Tomari’s team explored old data on silkworm piRNAs, which led them to make comparisons with current data. This unexpected comparison resulted in their groundbreaking finding.

While still early days for this research, its potential downstream applications are vast and promising. As scientists continue to explore the complexities of genetic mutations, they may uncover new insights into how cells adapt to combat malicious jumping genes – ultimately paving the way for improved diagnostic and therapeutic strategies against unwanted genetic changes.

Behavioral Science

“Rewired for Romance: Scientists Give Gift-Giving Behavior to Singing Fruit Flies”

By flipping a single genetic switch, researchers made one fruit fly species adopt the gift-giving courtship of another, showing how tiny brain rewiring can drive evolutionary change.

Avatar photo

Published

on

Rewired for Romance: Scientists Give Gift-Giving Behavior to Singing Fruit Flies

In a groundbreaking study published in the journal Science, researchers from Japan have successfully transferred a unique courtship behavior from one species of fruit fly to another. By activating a single gene in insulin-producing neurons, the team made Drosophila melanogaster, a species that typically sings “courtship songs,” perform a gift-giving ritual it had never done before.

The study reveals that the reason for this difference lies in the connection between insulin-producing neurons and the courtship control center in the brain. In gift-giving flies (D. subobscura), these cells are connected, while in singing flies (D. melanogaster), they remain disconnected. This discovery highlights that the evolution of novel behaviors does not necessarily require the emergence of new neurons; instead, small-scale genetic rewiring can lead to behavioral diversification and species differentiation.

The researchers inserted DNA into D. subobscura embryos to create flies with heat-activated proteins in specific brain cells. They used heat to activate groups of these cells and compared the brains of flies that did and did not regurgitate food. The study identified 16-18 insulin-producing neurons that make the male-specific protein FruM, clustered in a part of the brain called the pars intercerebralis.

“Our findings indicate that the evolution of novel behaviors does not necessarily require the emergence of new neurons; instead, small-scale genetic rewiring in a few preexisting neurons can lead to behavioral diversification and, ultimately, contribute to species differentiation,” said Dr. Yusuke Hara, co-lead author from the National Institute of Information and Communications Technology (NICT).

This study demonstrates how scientists can trace complex behaviors like nuptial gift-giving back to their genetic roots to understand how evolution creates entirely new strategies that help species survive and reproduce.

The research was conducted with support from KAKENHI Grant-in-Aid for Scientific Research and has been published in the journal Science on August 14, 2025.

Continue Reading

Agriculture and Food

Breaking New Ground: Scientists Develop Groundbreaking Chromosome Editing Technology

A group of Chinese scientists has created powerful new tools that allow them to edit large chunks of DNA with incredible accuracy—and without leaving any trace. Using a mix of advanced protein design, AI, and clever genetic tweaks, they’ve overcome major limitations in older gene editing methods. These tools can flip, remove, or insert massive pieces of genetic code in both plants and animals. To prove it works, they engineered rice that’s resistant to herbicides by flipping a huge section of its DNA—something that was nearly impossible before.

Avatar photo

Published

on

The field of genetic engineering has taken a significant leap forward with the development of two new genome editing technologies by a team of Chinese researchers led by Prof. Gao Caixia from the Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences. These innovations, collectively known as Programmable Chromosome Engineering (PCE) systems, have been published in the prestigious journal Cell.

The PCE system is an upgrade to the well-known Cre-Lox technology, which has long been used for precise chromosomal manipulation. However, this older method had three major limitations that hindered its broader application: low recombination efficiency, reversible recombination activity, and the need for a scar (a small DNA fragment) at the editing site.

The research team tackled each of these challenges by developing novel methods to advance the state of this technology. Firstly, they created a high-throughput platform for rapid recombination site modification and proposed an asymmetric Lox site design that reduces reversible recombination activity by over 10-fold.

Secondly, they utilized their recently developed AiCE model – a protein-directed evolution system integrating general inverse folding models with structural and evolutionary constraints – to develop AiCErec. This approach enabled precise optimization of Cre’s multimerization interface, resulting in an engineered variant with a recombination efficiency 3.5 times that of the wild-type Cre.

Lastly, they designed and refined a scarless editing strategy for recombinases by harnessing the high editing efficiency of prime editors to develop Re-pegRNA, a method that uses specifically designed pegRNAs to perform re-prime editing on residual Lox sites, precisely replacing them with the original genomic sequence.

The integration of these three innovations led to the creation of two programmable platforms, PCE and RePCE. These platforms allow flexible programming of insertion positions and orientations for different Lox sites, enabling precise, scarless manipulation of DNA fragments ranging from kilobase to megabase scale in both plant and animal cells.

Key achievements include targeted integration of large DNA fragments up to 18.8 kb, complete replacement of 5-kb DNA sequences, chromosomal inversions spanning 12 Mb, chromosomal deletions of 4 Mb, and whole-chromosome translocations. As a proof of concept, the researchers used this technology to create herbicide-resistant rice germplasm with a 315-kb precise inversion.

This groundbreaking work not only overcomes the historical limitations of the Cre-Lox system but also opens new avenues for precise genome engineering in various organisms, demonstrating its transformative potential for genetic engineering and crop improvement.

Continue Reading

Biochemistry Research

“Unlocking Timekeeping Secrets: Scientists Reveal How Artificial Cells Can Accurately Keep Rhythm”

Scientists at UC Merced have engineered artificial cells that can keep perfect time—mimicking the 24-hour biological clocks found in living organisms. By reconstructing circadian machinery inside tiny vesicles, the researchers showed that even simplified synthetic systems can glow with a daily rhythm—if they have enough of the right proteins.

Avatar photo

Published

on

A team of researchers from UC Merced has made a groundbreaking discovery by creating tiny artificial cells that can accurately keep time, mimicking the daily rhythms found in living organisms. This achievement sheds light on how biological clocks stay on schedule despite the inherent molecular noise inside cells.

The study, published in Nature Communications, was led by bioengineering Professor Anand Bala Subramaniam and chemistry and biochemistry Professor Andy LiWang. The team’s findings show that artificial cells can glow in a regular 24-hour rhythm for at least four days when loaded with core clock proteins, one of which is tagged with a fluorescent marker.

However, when the number of clock proteins is reduced or the vesicles are made smaller, the rhythmic glow stops. This loss of rhythm follows a reproducible pattern, indicating that clocks become more robust with higher concentrations of clock proteins, allowing thousands of vesicles to keep time reliably – even when protein amounts vary slightly between vesicles.

To explain these findings, the team built a computational model that revealed another component of the natural circadian system – responsible for turning genes on and off – does not play a major role in maintaining individual clocks but is essential for synchronizing clock timing across a population. The researchers also noted that some clock proteins tend to stick to the walls of the vesicles, meaning a high total protein count is necessary to maintain proper function.

“This study shows that we can dissect and understand the core principles of biological timekeeping using simplified, synthetic systems,” Subramaniam said.

The work led by Subramaniam and LiWang advances the methodology for studying biological clocks, according to Mingxu Fang, a microbiology professor at Ohio State University and an expert in circadian clocks. “This new study introduces a method to observe reconstituted clock reactions within size-adjustable vesicles that mimic cellular dimensions,” Fang said. “This powerful tool enables direct testing of how and why organisms with different cell sizes may adopt distinct timing strategies, thereby deepening our understanding of biological timekeeping mechanisms across life forms.”

The study was supported by Subramaniam’s National Science Foundation CAREER award from the Division of Materials Research and by grants from the National Institutes of Health and Army Research Office awarded to LiWang.

Continue Reading

Trending