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“Mapping the Mind: Groundbreaking AI Tool Generates 3D Map of the Brain”

A new AI tool builds sophisticated map of mouse brains.

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Mapping the Mind: Groundbreaking AI Tool Generates 3D Map of the Brain

Imagine being able to see inside the human brain, zooming in on specific areas, and exploring the intricate network of molecules that make it function. This is now possible thanks to a groundbreaking new computational tool developed by researchers at the University of Florida.

The AI-driven MetaVision3D tool creates a high-resolution 3D map of the brain in mice, allowing users to explore each section of tissue in stunning detail. The map shows thousands of molecules that produce energy for brain functions, providing unprecedented insights into cellular metabolism and disease mechanisms.

This technological leap is made possible by the team’s use of UF’s HiPerGator supercomputer, which enabled them to scan 79 brain sections one thin layer at a time using high-tech imaging machines. The images were then aligned and stacked together using AI algorithms, reconstructing the whole brain metabolome in 3D.

The implications are significant. By studying this map, researchers can better understand the role of metabolism in Alzheimer’s disease and other neurodegenerative disorders, paving the way for new targeted treatments. The tool also opens up possibilities for developing personalized medicine approaches, where treatments can be tailored to an individual’s specific brain chemistry.

Xin Ma, a doctoral student in biostatistics who worked on the project, said: “Using our methodology, we can map thousands of molecules in the brain and precisely where they are located inside each brain region. It is unprecedented.”

The researchers have made their database and web server publicly accessible to support the growing field of scientists studying links between metabolism and the mind.

Ramon Sun, Ph.D., director of the Center for Advanced Spatial Biomolecule Research and associate director for innovation of UF’s McKnight Brain Institute, said: “We couldn’t have done it without NIH funding. This funding fuels our efforts to uncover metabolic drivers of Alzheimer’s and pave the way for new interventions to prevent and treat this devastating disease.”

The MetaVision3D tool is a game-changer in the field of neuroscience, providing a new angle for researchers to study brain function and develop treatments that target precise areas of the brain. As Sara Burke, Ph.D., director of UF’s Center for Cognitive Aging and Memory Clinical Translational Research, said: “For disease prevention and treatment, we have opened a new angle for biologists to study.”

With this breakthrough tool, researchers can now work towards developing targeted treatments that can improve brain function and quality of life for millions of people worldwide. The future of neuroscience has never looked brighter.

Animal Learning and Intelligence

Mapping the Mouse Brain: Unveiling the Secrets of Visual Perception and Connections

In a massive scientific effort, hundreds of researchers have helped to map the connections between hundreds of thousands of neurons in the mouse brain and then overlayed their firing patterns in response to visual stimuli. This breakthrough is a critical piece of foundational science to build toward understanding how our brains process visual information to reconstruct the images we see every day.

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The scientists have made a groundbreaking discovery in understanding the intricacies of the mouse brain. In an unprecedented effort, hundreds of researchers worked together to map the connections between hundreds of thousands of neurons in the mouse brain and overlay their firing patterns in response to visual stimuli. This breakthrough is a crucial piece of foundational science that will help us comprehend how our brains process visual information, allowing us to reconstruct the images we see every day.

The human brain contains 86 billion neurons that make trillions of connections with each other through electrical firings. The complexity of its wiring diagram and the rapid movement of electrical signals across it in millisecond time frames hold the secrets of how our brain enables us to think, feel, and act. Although the current findings focus on a tiny fraction of the brain, they reveal the complex connections between cells and show how those connections are wired to produce functional responses.

To achieve this study, researchers presented video clips to mice genetically engineered for their neurons to emit light when they fire. The neuron firing patterns in areas associated with vision were optically recorded across a cubic millimeter – about the size of a grain of sand. Within this deceptively small amount of tissue lies remarkable complexity: four kilometers of axons, the processes that nerve cells use to communicate with each other, intertwined to make more than 524 million connections called synapses across more than 200,000 cells.

To map these connections, teams worked 12-hour shifts for 12 straight days to carefully cut and image ultra-thin slices of the brain tissue using electron microscopes. Reconstruction was the most challenging next step, as it required accurate stitching together almost 28,000 EM images to align the connections that cross the volume of brain tissue. This was followed by months of tracing the connections using deep learning algorithms, manual proofreading, and automated validation.

Deep learning predictive models were constructed and validated to explain visual information processing in the cortex. The sheer amount of data collected to create this tiny map comes out to 1.6 petabytes, roughly the equivalent of 22 years of continuous HD video.

These results come at a time when maps of neurons and their connections are increasingly revealing the mysteries of the brain. In 2023, research funded by the National Institutes of Health Brain Research Through Advancing Innovative Neurotechnologies Initiative produced the first complete cell atlas of the mouse brain, including the types and locations surveyed from more than 32 million cells. Last year, the NIH BRAIN Initiative “Flywire” project led to the complete mapping of the common fruit fly brain, demonstrating the unique value of mapping the whole brain in its entirety.

Funding for this project was provided through the Machine Intelligence from Cortical Networks Program of the Intelligence Advanced Research Projects Activity and the NIH BRAIN Initiative. The findings, published in a package of 10 papers published in the Nature family of journals, represent more than seven years of work performed by more than 150 scientists around the world.

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Animal Learning and Intelligence

The Link Between Cannabis Use and Psychosis: Uncovering the Brain’s Dopamine System

A new study found that people with cannabis use disorder (CUD) had elevated dopamine levels in a brain region associated with psychosis.

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The connection between cannabis use and psychosis has long been a topic of interest for researchers. A recent study led by McGill University sheds light on the brain’s dopamine system as a possible explanation for why cannabis use increases the risk of hallucinations and delusions, key symptoms of schizophrenia and other psychotic disorders.

Dopamine is a neurotransmitter that regulates mood and motivation, and an excess is associated with psychosis. The study reveals that individuals with cannabis use disorder (CUD) have elevated dopamine levels in a brain region linked to psychosis. This finding could help explain why cannabis use increases the risk of hallucinations and delusions.

The study involved 61 participants, including those with and without CUD, as well as individuals with early-stage schizophrenia, some of whom also had CUD. Using a specialized brain scan called neuromelanin-MRI, researchers measured their neuromelanin signal, which reflects dopamine activity. The results showed that people with CUD had an abnormally high neuromelanin signal, and the elevation was tied to the severity of their cannabis use.

These findings have significant implications for educating youth about the risks associated with frequent cannabis use. In Canada, about one-in-five youth are cannabis users, consuming it daily or almost daily. Understanding the potential impact on mental health remains a pressing question.

The study’s lead author, Jessica Ahrens, notes that “for a long time, clinical researchers across the world have been searching for a link showing that cannabis affects the brain mechanism behind psychosis. We now show that a shared dopamine pathway could be the answer.”

Future research will explore whether long-term cannabis use leads to lasting dopamine changes and whether these effects reverse after quitting. As Dr. Lena Palaniyappan, Professor of Psychiatry at McGill and Psychiatrist at the Douglas Mental Health University Institute, suggests, “our findings could help doctors and mental health professionals better educate patients about the potential risks of frequent cannabis use, especially for those with a family history of psychosis.”

The study’s publication in Jama Psychiatry provides valuable insights into the link between cannabis use and psychosis, and its findings have important implications for public health and education.

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Animal Learning and Intelligence

“The Optimism Effect: How Medical Detection Dogs’ Emotional States Influence Their Performance”

A new, exploratory study has revealed statistical links between the performance of medical detection dogs and their scores on behavioral and affective tests, finding that more ‘optimistic’ dogs tended to perform better overall on detection tasks, but ‘pessimistic’ dogs had higher scent detection specificity.

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The article’s original findings have been rewritten to improve clarity, structure, and style while maintaining its core ideas. Here’s the rewritten version:

Researchers at the University of Bristol recently conducted a groundbreaking study on medical detection dogs, uncovering statistical links between their performance in scent detection tasks and their emotional states. The study, published in PLOS One, found that “optimistic” dogs tended to perform better overall on detection tasks, while “pessimistic” dogs had higher specificity in scent detection.

To assess the dogs’ emotional states, researchers used a behavioral test called judgment bias testing. In this test, dogs are first trained to associate specific locations with treats and others without treats. When presented with intermediate locations where a treat may or may not be present, the dogs’ responses are evaluated as a proxy for their emotional states.

More “optimistic” dogs, characterized by quicker approaches to intermediate locations in hopes of a treat, tended to score higher on detection tasks. These dogs also showed higher confidence, food orientation, and playfulness scores. In contrast, more “pessimistic” dogs achieved a higher degree of specificity in scent detection tasks among the fully trained medical detection dogs.

This study does not establish cause-effect relationships, but it suggests that differences in dogs’ searching styles and performance in detection tasks could be influenced by underlying differences in affective or cognitive processes. The researchers propose that judgment bias testing might hold promise as a screening tool for potential detection dogs.

The findings have significant implications for training and selection methods in medical detection dogs. Understanding the link between emotional states and performance can help trainers select and support successful dogs. The study’s insights could also be relevant to the welfare of companion dogs, highlighting the importance of considering their emotional well-being in their care and management.

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