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Extreme Survival

Unlocking the Secrets of Bat Immunity: A New Platform for Studying Viral Defense Mechanisms

Bats are known as natural hosts for highly pathogenic viruses such as MERS- and SARS-related coronaviruses, as well as the Marburg and Nipah viruses. In contrast to the severe and often fatal disease outcomes these viruses cause in humans, bats generally do not show obvious signs of viral illness following infection. An international research team has developed an innovative organoid research platform that allowed them to closely investigate the cellular antiviral defense mechanisms of mucosal epithelial tissues of bats. The results could pave the way for the development of new therapies against viral diseases.

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Researchers have long been fascinated by bats’ ability to host highly pathogenic viruses without showing obvious signs of illness. Now, a team led by Dr. Max Kellner and Prof. Josef Penninger has developed an innovative organoid research platform that allows them to closely investigate the cellular antiviral defense mechanisms of mucosal epithelial tissues in bats. The results have been published in Nature Immunology and could pave the way for the development of new therapies against viral diseases.

The researchers used tissue samples from Egyptian fruit bats, which are natural hosts of the highly pathogenic Marburg virus, to generate organoids that mimic the initial viral exposure – mucosal surfaces serve as entry points for many viruses into the body. The team successfully infected both bat and human airway organoids with the Marburg virus in a high-security Biosafety Level 4 (S4) laboratory.

Compared to human models, bat organoids exhibited a significantly higher baseline antiviral immune activity even before infection. This likely enables bats to control viral replication early in infected mucosal tissues, while human cells are less effective at recognizing the Marburg virus in the early stages of infection, allowing uncontrolled replication and spread throughout the body.

The researchers discovered that type III interferons play a crucial role in the mucosal antiviral immunity of Egyptian fruit bats. After infection with various zoonotic viruses, bat organoids exhibited an exceptionally strong production of these interferons. The team confirmed the strong antiviral activity of these interferons through additional stimulation experiments and genetic modifications.

The results suggest that bats can effectively prevent uncontrolled viral replication through a combination of innate immune processes, thereby avoiding viral diseases. Understanding the resilience mechanisms of these animals against highly pathogenic viruses and the evolutionary adaptation of their immune systems is essential for developing antiviral therapies and fighting future pandemics.

In addition to the novel insights into the antiviral mechanisms of bat mucosal tissues, bat organoids will offer an innovative platform for more precise studies of the complex biology of bats at the genetic and molecular levels. The research team plans to further develop the organoid models in terms of complexity and make them available to the scientific community.

Only by working together can we understand the complex mechanisms that evolution has shaped in animals like bats, and from this, develop new approaches for combating and treating viral diseases.

Evolutionary Biology

Defying Darwin: Scientists Discover Worms Rewrite Their DNA to Survive on Land

New research is shaking up our understanding of evolution by revealing that some species may not evolve gradually at all. Instead, scientists discovered that certain marine worms experienced an explosive genetic makeover when they transitioned to life on land over 200 million years ago. Their entire genome broke into pieces and was randomly reassembled an event so extreme it stunned researchers. This radical shift supports the theory of “punctuated equilibrium,” where species remain unchanged for ages and then suddenly leap forward.

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The article delves into the fascinating world of evolutionary biology, where scientists have made groundbreaking discoveries about the genetic mechanisms that allowed ancient marine worms to transition to life on land over 200 million years ago. This study, led by the Institute of Evolutionary Biology (IBE), challenges traditional views of evolution and reveals a more complex and dynamic process than previously thought.

The researchers sequenced the high-quality genomes of various earthworms and compared them to other closely related annelid species, such as leeches and bristle worms or polychaetes. Their analysis revealed an unexpected result: the annelids’ genomes were not transformed gradually, but in isolated explosions of deep genetic remodelling.

This phenomenon challenges the models of genome evolution known to date, given that many of the genomic structures observed in other species are almost perfectly conserved. The researchers discovered that marine worms broke their genome into a thousand pieces only to reconstruct it and continue their evolutionary path on land.

The study suggests that these adjustments not only moved genes around but also joined fragments that had been separated, creating new “genetic chimeras” which would have driven their evolution. This radical genetic mechanism could provide evolutionary responses to the challenges of adapting to life on land, such as breathing air or being exposed to sunlight.

The observations in the study are consistent with a punctuated equilibrium model, where we observe an explosion of genomic changes after a long period of stability. However, the lack of experimental data for or against makes it difficult to validate this theory.

This phenomenon has previously been observed in the progression of cancer in humans, and the term chromoanagenesis covers several mechanisms that break down and reorganize chromosomes in cancerous cells. The only difference is that while these genomic breakdowns and reorganizations are tolerated by worms, in humans they lead to diseases.

The study opens the door to a better understanding of the potency of this radical genomic mechanism, with implications for human health. It also reawakens one of the liveliest scientific debates of our time, as both visions – Darwin’s and Gould’s – are compatible and complementary.

In the future, a larger investigation of the genomic architecture of less-studied invertebrates could shed light on the genomic mechanisms shaping the evolution of species. There is a great diversity hidden in the invertebrates, and studying them could bring new discoveries about the diversity and plasticity of genomic organization and challenge dogmas on how we think genomes are organized.

The study involved the collaboration of research staff from various institutions, including the Universitat Autònoma de Barcelona, Trinity College, the Universidad Complutense de Madrid, the University of Köln, and the Université Libre de Bruxelles.

The study received support from SEA2LAND (Starting Grant funded by the European Research Council) and from the Catalan Biogenome Project, which funded the sequencing of one of the worm genomes.

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Acid Rain

The Hidden Impact of Anoxic Pockets on Sandy Shores

Some microbes living on sand grains use up all the oxygen around them. Their neighbors, left without oxygen, make the best of it: They use nitrate in the surrounding water for denitrification — a process hardly possible when oxygen is present. This denitrification in sandy sediments in well-oxygenated waters can substantially contribute to nitrogen loss in the oceans.

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The Hidden Impact of Anoxic Pockets on Sandy Shores

Human activities have dramatically increased nitrogen inputs into coastal seas, leading to a significant amount of this human-derived nitrogen being removed by microorganisms in coastal sands through denitrification. However, research has shown that this process can also occur in oxygenated sands, and scientists from the Max Planck Institute for Marine Microbiology in Bremen, Germany, have now revealed how this happens.

The scientists used a method called microfluidic imaging to visualize the diverse and uneven distribution of microbes and the oxygen dynamics on extremely small scales. “Tens of thousands of microorganisms live on a single grain of sand,” explains Farooq Moin Jalaluddin from the Max Planck Institute for Marine Microbiology. The researchers could show that some microbes consume more oxygen than is resupplied by the surrounding pore water, creating anoxic pockets on the surface of the sand grains.

These anoxic microenvironments have so far been invisible to conventional techniques but have a dramatic effect: “Our estimates based on model simulations show that anaerobic denitrification in these anoxic pockets can account for up to one-third of the total denitrification in oxygenated sands,” says Jalaluddin.

The researchers calculated how relevant this newly researched form of nitrogen removal is on a global scale and found that it could account for up to one-third of total nitrogen loss in silicate shelf sands. Consequently, this denitrification is a substantial sink for anthropogenic nitrogen entering the oceans.

In conclusion, the hidden impact of anoxic pockets on sandy shores has been revealed by scientists, highlighting the importance of these microenvironments in removing nitrogen from coastal seas and emphasizing the need to consider them when assessing the overall nitrogen budget of our planet.

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Cholesterol

“Breaking Down Barriers to IBS Relief: The Mediterranean Diet’s Promising Pilot Study Results”

In a comparative pilot study, the Mediterranean diet and the low FODMAP diet both provided relief for patients with IBS.

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Breaking Down Barriers to IBS Relief: The Mediterranean Diet’s Promising Pilot Study Results

A groundbreaking pilot study from Michigan Medicine researchers has revealed that the Mediterranean diet may provide symptom relief for individuals with irritable bowel syndrome (IBS). Conducted on patients diagnosed with either IBS-D (diarrhea) or IBS-M (mixed symptoms of constipation or diarrhea), this innovative study aimed to compare the efficacy of two popular dietary interventions: the Mediterranean diet and the low FODMAP diet.

The research team randomly assigned participants into two groups, one following the Mediterranean diet and the other adhering to the restriction phase of a low FODMAP diet. The primary endpoint was an FDA-standard 30% reduction in abdominal pain intensity after four weeks. Notably, while both diets showed symptom relief, the low FODMAP group experienced greater improvement measured by both abdominal pain intensity and IBS symptom severity score.

The study’s findings are significant, given that a majority of patients with IBS prefer dietary interventions over medication. Furthermore, restrictive diets like low FODMAP can be difficult to adopt due to their complexity and potential for nutrient deficiencies. In contrast, the Mediterranean diet is already well-established as a beneficial eating pattern for overall health.

The study’s lead author, Prashant Singh, MBBS, emphasized that “restrictive diets can be costly and time-consuming” and may even lead to disordered eating behaviors. The researchers believe that further studies comparing the long-term efficacy of the Mediterranean diet with the low FODMAP reintroduction phase are necessary to fully understand its potential as an effective intervention for patients with IBS.

The University of Michigan’s William Chey, M.D., senior author on the paper, added that “this study adds to a growing body of evidence which suggests that a Mediterranean diet might be a useful addition to the menu of evidence-based dietary interventions for patients with IBS.”

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