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Bacteria

Unraveling the Evolution of Fever-Causing Bacteria: Ancient DNA Reveals a Hidden Past

Researchers have analyzed ancient DNA from Borrelia recurrentis, a type of bacteria that causes relapsing fever, pinpointing when it evolved to spread through lice rather than ticks, and how it gained and lost genes in the process.

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The study of ancient DNA has unveiled a fascinating chapter in the history of fever-causing bacteria, specifically Borrelia recurrentis, which causes relapsing fever. Researchers at the Francis Crick Institute and UCL have analyzed ancient DNA from this bacteria, pinpointing when it evolved to spread through lice rather than ticks, and how it gained and lost genes in the process.

Relapsing fever is a disease characterized by recurring episodes of fever, typically found in areas with poor sanitation or overcrowding. It is a distant cousin of the bacteria that cause Lyme disease. Historical records in Britain have referred to periods of a ‘sweating sickness’ or ‘epidemic fever,’ which may have been caused by B. recurrentis. However, limited data means the likely cause of these outbreaks remains unknown.

The researchers sequenced the whole genome from four samples of B. recurrentis, ranging from 2,300 to 600 years ago. These ancient samples were obtained from the skeletons of people who were infected hundreds of years ago. The DNA is a shadow of the bacteria that once circulated in their blood and has been captured in bones and teeth.

The study found that the species likely diverged from its nearest tick-borne cousin, B. duttonii, about 6,000 to 4,000 years ago. During this time, much of the genome was lost during the tick-to-louse transition, but new genes were also gained over time. These genetic changes affected the bacteria’s ability to hide from the immune system and share DNA with neighboring bacteria.

The researchers suggest that the divergence from the bacteria’s tick-borne ancestor happened during the transition from the Neolithic period to the Early Bronze Age, a time of change in human lifestyles, as people began to domesticate animals and live in more dense settlements. This may have helped B. recurrentis spread from person to person more easily.

The study also raises the possibility that the development of sheep farming for wool at this time may have given an advantage to louse-borne pathogens, as wool has better conditions for lice to lay eggs. The researchers conclude that the evolution of B. recurrentis highlights that a combination of genetic and environmental changes can help pathogens spread and infect populations more easily.

The findings of this study shed light on the evolution of a neglected disease and provide valuable insights into how bacteria adapt to new environments and vectors.

Alternative Medicine

Cleaning Up the Water, Cooling Down the Risks: A New Approach to Safer Romaine Lettuce

Romaine lettuce has a long history of E. coli outbreaks, but scientists are zeroing in on why. A new study reveals that the way lettuce is irrigated—and how it’s kept cool afterward—can make all the difference. Spraying leaves with untreated surface water is a major risk factor, while switching to drip or furrow irrigation cuts contamination dramatically. Add in better cold storage from harvest to delivery, and the odds of an outbreak plummet. The research offers a clear, science-backed path to safer salads—one that combines smarter farming with better logistics.

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As the world grapples with the issue of food safety, one persistent problem has been the contamination of romaine lettuce by E. coli bacteria. A new study from Cornell University sheds light on the root causes of this issue and proposes practical solutions to minimize risks to human health.

The research, co-authored by Renata Ivanek and Martin Wiedmann, two renowned experts in food safety, identifies key interventions that can make a significant difference in ensuring the safety of romaine lettuce. These include:

1. Reducing produce contamination: By addressing contaminated irrigation water as a major source of bacterial contamination, farmers and producers can minimize the risk of E. coli outbreaks.
2. Improving temperature control: Proper cold storage temperatures along the entire supply chain are crucial to preventing bacterial growth and maintaining food quality.
3. Optimizing postharvest techniques: Consistent application of produce washes during processing can significantly reduce bacterial numbers, while switching from overhead spray irrigation systems to drip or furrow irrigation can also minimize risk.

According to Ivanek, the study’s findings suggest that contaminated irrigation water is a significant contributor to E. coli contamination in romaine lettuce. By using untreated surface water for irrigation through overhead spray systems, farmers inadvertently introduce bacteria into the produce. Switching to treated water or using drip or furrow irrigation can significantly reduce this risk.

In addition to these interventions, Ivanek emphasizes the importance of proper temperature control during transportation and storage. A “perfect storm” of contamination occurs when bacteria are introduced at the farm or processing level, only to be allowed to grow due to improper temperatures during transport.

The comprehensive practices explored in this study aim to aid decision-makers in establishing and enhancing food safety best management practices. Ivanek notes that the American food supply chain is relatively safe compared to other countries, but there is still room for improvement.

By implementing these practical solutions, farmers, producers, and policymakers can work together to make the romaine lettuce supply chain even safer for consumers.

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Agriculture and Food

“Unlocking Photosynthesis: MIT Scientists Boost Enzyme Efficiency with Directed Evolution Technique”

Scientists at MIT have turbocharged one of nature’s most sluggish but essential enzymes—rubisco—by applying a cutting-edge evolution technique in living cells. Normally prone to wasteful reactions with oxygen, this revamped bacterial rubisco evolved to work more efficiently in oxygen-rich environments. This leap in enzyme performance could pave the way for improving photosynthesis in plants and, ultimately, increase crop yields.

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MIT scientists have made a groundbreaking discovery in boosting the efficiency of an essential enzyme that powers all plant life – rubisco. By using a directed evolution technique, they were able to enhance a version of rubisco found in bacteria from low-oxygen environments by up to 25 percent. This breakthrough has significant implications for improving crop yields and reducing energy waste in plants.

The researchers used a newer mutagenesis technique called MutaT7, which allowed them to perform both mutagenesis and screening in living cells, dramatically speeding up the process. They began with a version of rubisco isolated from semi-anaerobic bacteria known as Gallionellaceae, one of the fastest rubiscos found in nature.

After six rounds of directed evolution, the researchers identified three different mutations that improved the rubisco’s resistance to oxygen and increased its carboxylation efficiency. These mutations are located near the enzyme’s active site, where it performs carboxylation or oxygenation.

The MIT team is now applying this approach to other forms of rubisco, including those found in plants. Plants lose about 30 percent of the energy from sunlight they absorb through a process called photorespiration, which occurs when rubisco acts on oxygen instead of carbon dioxide.

“This really opens the door to a lot of exciting new research, and it’s a step beyond the types of engineering that have dominated rubisco engineering in the past,” said Robert Wilson, a research scientist in the Department of Chemistry. “There are definite benefits to agricultural productivity that could be leveraged through a better rubisco.”

The research was funded by several organizations, including the National Science Foundation and the Abdul Latif Jameel Water and Food Systems Lab Grand Challenge grant.

This breakthrough has significant implications for improving crop yields and reducing energy waste in plants. The researchers’ directed evolution technique allows them to look at a lot more mutations in the enzyme than has been done in the past, making it a compelling demonstration of successful improvement of a rubisco’s enzymatic properties.

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Animals

“New Bat-Borne Viruses Discovered in China Pose Potential Pandemic Threat”

Two newly discovered viruses lurking in bats are dangerously similar to Nipah and Hendra, both of which have caused deadly outbreaks in humans. Found in fruit bats near villages, these viruses may spread through urine-contaminated fruit, raising serious concerns. And that’s just the start—scientists found 20 other unknown viruses hiding in bat kidneys.

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Scientists in China have made a groundbreaking discovery that could potentially alter our understanding of pandemics. Researchers from the Yunnan Institute of Endemic Disease Control and Prevention have found two new viruses in bats that are closely related to the deadly Nipah and Hendra viruses, which can cause severe brain inflammation and respiratory disease in humans.

The study, published in the open-access journal PLOS Pathogens, analyzed 142 bat kidneys from ten species collected over four years across five areas of Yunnan province. Using advanced genetic sequencing, the team identified 22 viruses – 20 of them never seen before. Two of these newly discovered viruses belong to the henipavirus genus, which includes Nipah and Hendra viruses known for their high fatality rates in humans.

The researchers’ findings are concerning because these henipaviruses can spread through urine, raising the risk of contaminated fruit and the possibility of the viruses jumping to humans or livestock. This highlights the importance of comprehensive microbial analyses of previously understudied organs like bat kidneys to better assess spillover risks from bat populations.

As bats are natural reservoirs for a wide range of microorganisms, including many notable pathogens that have been transmitted to humans, it is essential to conduct thorough research on these animals’ infectomes. This study not only broadens our understanding of the bat kidney infectome but also underscores critical zoonotic threats and highlights the need for comprehensive microbial analyses.

The authors emphasize that their findings raise urgent concerns about the potential for these viruses to spill over into humans or livestock, making it crucial for scientists, policymakers, and public health officials to work together to mitigate this risk. By analyzing the infectome of bat kidneys collected near village orchards and caves in Yunnan, the researchers have uncovered not only the diverse microbes bats carry but also the first full-length genomes of novel bat-borne henipaviruses closely related to Hendra and Nipah viruses identified in China.

Funding for this study came from various grants and programs, including the National Key R&D Program of China, Yunnan Revitalization Talent Support Program Top Physician Project, National Natural Science Foundation of China, and others. The funders had no role in study design, data collection, analysis, decision to publish, or preparation of the manuscript.

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