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Biology

“Reviving the Northern White Rhino: A Genome-Mapped Hope for Conservation”

The northern white rhinoceros is one of the rarest animals on Earth, with just two females left and no natural way for the species to reproduce. Now, scientists have mapped the entire genome of a northern white rhino. This represents a crucial step toward bringing the critically endangered species back from the edge using advanced reproductive technologies. The complete genome can be used as a reference to analyze the health of previously developed northern white rhinoceros stem cells. Eventually, those stem cells may be able to generate sperm and eggs to yield new rhinos.

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“Reviving the Northern White Rhino: A Genome-Mapped Hope for Conservation”

In a groundbreaking achievement, an international team of scientists has successfully mapped the entire genome of the northern white rhinoceros, one of the rarest animals on Earth. This milestone marks a crucial step towards bringing this critically endangered species back from the brink of extinction using advanced reproductive technologies.

The complete genome serves as a reference point to analyze the health of previously developed northern white rhino stem cells. These stem cells may eventually be able to generate sperm and eggs, leading to the birth of new rhinos. The genome was published in PNAS on May 13, 2025.

“This is great progress not only for white rhinos but for the entire field of animal conservation,” says co-senior author Jeanne Loring, Professor Emeritus at Scripps Research and a research fellow at the San Diego Zoo Wildlife Alliance. “We’re getting closer to being able to rescue animals that otherwise might go extinct during our lifetimes.”

The new genome was created using cutting-edge DNA sequencing and genome mapping techniques combined with cells previously collected from a male northern white rhinoceros named Angalifu, who lived at the San Diego Zoo Safari Park until his death in 2014. At the time, his skin cells were cryopreserved in the San Diego Zoo Wildlife Alliance’s Frozen Zoo.

“We layered together multiple technologies to make the most accurate genomic map possible,” says Loring. “It’s like the rhino version of the Human Genome Project.”

This new genome represents a vital tool for saving the endangered species. In 2011, Loring’s team created the first induced pluripotent stem cells from northern white rhinos. They have since created other lines of stem cells from nine different individual northern white rhinos.

Collaboration was integral to achieving this milestone, and the high-quality reference genome is a key piece of the puzzle that helps scientists understand how the stem cells are functioning and guides their next steps in the genetic rescue process.

One major hurdle has always been quality control. Without a reference genome, scientists didn’t know whether any of those stem cells had picked up harmful mutations during lab growth. In the new research, Loring’s team was able to use the new, complete genome to analyze the previously created stem cell lineages and discovered that one of the most promising lines had a large chunk of DNA missing.

“If we hadn’t built this genome, we wouldn’t have known that,” adds Loring. “We thought we had a good stem cell line, but it turns out it had a mutation that could have made it unsafe to use for reproduction. Now we can go back and screen all the others.”

The new genome also settled lingering questions about how different northern and southern white rhinos really are. Some earlier data suggested significant DNA differences that might make it risky for southern white rhinos to be implanted with northern white rhino embryos. But updated comparisons show their genomes are strikingly similar, giving scientists confidence that southern white rhinos can serve as surrogates without major complications.

For Loring, who’s been working on this project since 2007, the new genome is a symbol of what’s possible. “Now that we have their genome, we can apply all the tools we’ve developed for humans — CRISPR gene editing, reporter genes, everything — to help rescue them.”

The work sets a powerful example for other endangered species, Loring says. Efforts to save hundreds of different endangered species depend on careful biobanking like that being done by the San Diego Zoo Wildlife Alliance.

Ultimately, the goal is to grow healthy embryos and implant them into surrogate mothers, then raise the resulting calves in protected environments. It’s not Jurassic Park, Loring is quick to point out, and it doesn’t depend on gene editing or engineering.

“We’re not resurrecting a mystery species — we’re restoring one we still know intimately,” she adds. “The rhino is big, gentle and unforgettable. It’s the perfect symbol for what science can do to fight extinction.”

Animals

Sugar-Based Sensors Revolutionize Snake Venom Detection

Researchers have published the first example of a synthetic sugar detection test for snake venom, offering a new route to rapid diagnosis and better antivenoms.

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The detection of snake venom is a crucial step in treating life-threatening snake bites. According to the World Health Organization (WHO), every five minutes, 50 people are bitten by a snake worldwide, resulting in four permanent disabilities and one death. Traditional methods for diagnosing snake venom rely on antibodies, which have limitations such as high costs, lengthy procedures, and inconsistencies.

Researchers at the University of Warwick have made a groundbreaking discovery that could revolutionize snake venom detection. They have developed a glycopolymer-based ultraviolet-visible (UV-vis) test to detect Western Diamondback Rattlesnake (Crotalus atrox) venom. This new assay is a cheap and rapid alternative to antibody-based approaches, showcasing a version that specifically detects Crotalus atrox venom.

Dr. Alex Baker, lead researcher of the Baker Humanitarian Chemistry Group, explained that snake venoms are complex, making it challenging to detect toxins in the body. However, their research has produced an assay using synthetic sugars that mimic the natural sugar receptors targeted by venom proteins. The team engineered synthetic chains of sugar-like units (glycopolymers) attached to gold nanoparticles to amplify the response and make the reaction visible.

The Western Diamondback Rattlesnake venom binds to specific sugar molecules on red blood cells and platelets, disrupting blood clotting or interfering with immune responses leading to disability and death. The new assay changes color when venom toxins bind to the synthetic sugars, providing a rapid and cheap detection method beyond antibody-based techniques.

Mahdi Hezwani, first author of the research paper, emphasized that this assay could be a game-changer for snake envenomation. The team tested venom from other snake species, such as the Indian Cobra (Naja naja), and found that it did not interact with glycans in the body. This suggests that the new assay may have potential to distinguish between different snake venoms based on their sugar-binding properties.

This is the first example of a diagnosis test using sugars for detecting snake venom in a rapid detection system, building on the work of the Warwick research group using a glyconanoparticle platform in COVID-19 detection. The new assay is faster, cheaper, and easier to store, making it a more practical solution for treating snake bites.

The University of Warwick’s STEM Connect programme has enabled this innovative research, demonstrating the potential for bold and innovative solutions in addressing global health challenges.

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Animal Learning and Intelligence

The Buzz on Caffeine: How it Affects the Sleeping Brain

Coffee can help you stay awake. But what does caffeine actually do to your brain once you’re asleep? Using AI, a team of researchers has an answer: it affects the brain’s ‘criticality’.

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The article delves into the intricate relationship between caffeine and the sleeping brain, offering fresh insights from a recent study published in Nature Communications Biology. Researchers from Université de Montréal have shed new light on how caffeine can modify sleep patterns and influence the brain’s recovery during the night.

Led by Philipp Thölke, a research trainee at UdeM’s Cognitive and Computational Neuroscience Laboratory (CoCo Lab), the team used AI and electroencephalography (EEG) to study caffeine’s effects on sleep. Their findings reveal that caffeine increases the complexity of brain signals and enhances brain “criticality” during sleep – a state characterized by balanced order and chaos.

Interestingly, this effect is more pronounced in younger adults, particularly during REM sleep, the phase associated with dreaming. The researchers attribute this finding to a higher density of adenosine receptors in young brains, which naturally decrease with age. Adenosine is a molecule that accumulates throughout the day, causing fatigue.

The study’s lead author, Thölke, notes that caffeine stimulates the brain and pushes it into a state of criticality, where it is more awake, alert, and reactive. However, this state can interfere with rest at night, preventing the brain from relaxing or recovering properly.

The researchers used EEG to record the nocturnal brain activity of 40 healthy adults on two separate nights: one when they consumed caffeine capsules three hours before bedtime and another when they took a placebo at the same time. They applied advanced statistical analysis and artificial intelligence to identify subtle changes in neuronal activity, revealing that caffeine increased the complexity of brain signals during sleep.

The team also discovered striking changes in the brain’s electrical rhythms during sleep: caffeine attenuated slower oscillations such as theta and alpha waves – generally associated with deep, restorative sleep – and stimulated beta wave activity, which is more common during wakefulness and mental engagement.

These findings suggest that even during sleep, the brain remains in a more activated, less restorative state under the influence of caffeine. This change in the brain’s rhythmic activity may help explain why caffeine affects the efficiency with which the brain recovers during the night, with potential consequences for memory processing.

The study’s implications are significant, particularly given the widespread use of caffeine as a daily remedy for fatigue. The researchers stress the importance of understanding its complex effects on brain activity across different age groups and health conditions. They add that further research is needed to clarify how these neural changes affect cognitive health and daily functioning, potentially guiding personalized recommendations for caffeine intake.

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Biology

Unraveling Microtubule Mysteries: Scientists Crack Code on Cellular Scaffolding Secrets

Scientists found out how naturally unstable filaments decide whether to grow or to shorten.

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A groundbreaking study has shed new light on the fundamental mechanisms governing microtubule growth within cells. Researchers from Queen Mary University of London and the University of Dundee have made a significant breakthrough by discovering that the ability of tubulin proteins at microtubule ends to connect with each other sideways determines whether a microtubule elongates or shortens.

Microtubules are crucial protein structures that form the internal skeleton of cells, providing structural support and generating dynamic forces that push and pull. These tiny filaments constantly assemble and disassemble by adding or removing tubulin building blocks at their ends. However, the precise rules dictating whether a microtubule grows or shrinks have long remained a mystery due to the complexity and miniature size of their ends.

The collaborative research team has cracked part of this code using advanced computer simulations coupled with innovative imaging techniques. This interdisciplinary approach has allowed them to address this complex biological question from a fresh perspective, bridging physics and biology.

Dr. Vladimir Volkov, co-lead author from Queen Mary University of London, explained the significance of their findings: “Understanding how microtubules grow and shorten is very important – this mechanism underlies division and motility of all our cells. Our results will inform future biomedical research, particularly in areas related to cell growth and cancer.”

Dr. Maxim Igaev, co-lead author from the University of Dundee, highlighted the power of their interdisciplinary approach: “Bridging physics and biology has allowed us to address this complex biological question from a fresh perspective. This synergy not only enriches both fields but also paves the way for discoveries that neither discipline could achieve in isolation.”

This exciting research deepens our understanding of fundamental cellular processes and opens potential new avenues for biomedical research, particularly in areas concerning cell proliferation and the development of treatments for diseases like cancer.

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