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Biology

The Hidden Parasites of Our DNA: Uncovering the Role of Introners in Genetic Complexity

A new study proves that a type of genetic element called ‘introners’ are the mechanism by which many introns spread within and between species, also providing evidence of eight instances in which introners have transferred between unrelated species in a process called ‘horizontal gene transfer,’ the first proven examples of this phenomenon.

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The genetic code that governs every living organism is not always beneficial. Some parts of DNA act like parasites, relying on the host for survival while contributing little to its overall well-being. These “selfish” genes are called introners, and they have been found to play a significant role in the evolution of genetic complexity.

Researchers from the University of California, Santa Cruz, have conducted a study that proves introners are responsible for many of these selfish genes spreading within and between species. This discovery sheds light on how genomes evolved to become so complex and could potentially be leveraged in human health research.

Introners are non-coding DNA segments that must be removed before proteins can be produced. They have been found to exist in varying amounts across all animals, plants, fungi, and protists, and have managed to successfully replicate themselves and survive despite not serving an evolutionary function.

The researchers, led by Russ Corbett-Detig, senior author on the study and professor of biomolecular engineering at the Baskin School of Engineering, have spent years studying introns. They wanted to understand why these non-protein-coding bits of DNA are seen in different amounts across species and how they have managed to replicate themselves.

Their research has shown that introners are a type of transposable element, also known as “jumping genes,” that can move from one part of the genome to another. They have found evidence for 1,093 families of introners among the 8,716 genomes analyzed, suggesting that there are many kinds of introners capable of spreading introns through the genomes of various species.

One of the most significant findings of this study is the first direct evidence for horizontal gene transfer of introners. The researchers found eight examples of an introner hopping out of the genome of one species and settling into the genome of another unrelated species that mating could not explain. This phenomenon has been observed in species as diverse as sea sponges, marine protists, and fungi.

The researchers propose that introners may be hitchhiking on giant viruses to transfer between species. This would mean that these selfish genetic elements are using other selfish elements to spread themselves throughout the genome.

While this study provides valuable insights into the evolution of genetic complexity, it also highlights the potential risks associated with introners. The process of alternative splicing, which is crucial for creating different versions of proteins from a single gene, can lead to health problems if it breaks a gene. Many researchers are studying how alternative splicing can be studied to better understand genetic disease.

In conclusion, the discovery of introners and their role in spreading selfish genes within and between species has significant implications for our understanding of genome evolution and human health research. Further studies on these hidden parasites of our DNA could potentially lead to breakthroughs in the treatment of genetic diseases.

Bacteria

Unveiling the Secrets of Pandoraea: How Lung Bacteria Forge Iron-Stealing Weapons to Survive

Researchers investigating the enigmatic and antibiotic-resistant Pandoraea bacteria have uncovered a surprising twist: these pathogens don’t just pose risks they also produce powerful natural compounds. By studying a newly discovered gene cluster called pan, scientists identified two novel molecules Pandorabactin A and B that allow the bacteria to steal iron from their environment, giving them a survival edge in iron-poor places like the human body. These molecules also sabotage rival bacteria by starving them of iron, potentially reshaping microbial communities in diseases like cystic fibrosis.

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As scientists continue to unravel the mysteries of the human microbiome, a team of researchers has made a groundbreaking discovery about the lung bacteria Pandoraea. These microbes have long been associated with disease-causing properties, but new research reveals that they also possess remarkable survival strategies, including the ability to forge iron-stealing weapons to thrive in challenging environments.

At the Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), researchers led by Elena Herzog have been studying Pandoraea bacteria, which are known to be pathogenic but also produce natural products with antibacterial effects. The team’s investigation has shed light on how these bacteria manage to survive in iron-poor environments within the human body.

Iron plays a vital role in living organisms, including bacteria, as it is essential for enzymes and the respiratory chain. However, in environments like the human body, where iron is scarce, microorganisms must adapt to compete for this essential resource. Pandoraea bacteria have developed a unique strategy by producing siderophores – small molecules that bind iron from their environment and transport it into the cell.

The researchers identified a previously unknown gene cluster called pan, which codes for a non-ribosomal peptide synthetase enzyme responsible for the production of siderophores. Through targeted inactivation of genes and advanced analytical techniques, they isolated two new natural products, Pandorabactin A and B, which can complex iron and play an important role in how Pandoraea strains survive.

Moreover, bioassays revealed that pandorabactins inhibit the growth of other bacteria by removing iron from these competitors. The researchers also analyzed sputum samples from cystic fibrosis patients, finding that the detection of the pan gene cluster correlates with changes in the lung microbiome. This suggests that pandorabactins could have a direct influence on microbial communities in diseased lungs.

While the study’s findings are still preliminary and not yet suitable for medical applications, they provide valuable insights into the survival strategies of Pandoraea bacteria and the complex competition for vital resources within the human body. As researchers continue to explore the intricacies of the microbiome, this discovery paves the way for further investigation and potentially innovative treatments in the future.

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Animals

“Red Vision Unlocked: Mediterranean Beetles Shatter Insect Color Limitations”

Beetles that can see the color red? That s exactly what scientists discovered in two Mediterranean species that defy the norm of insect vision. While most insects are blind to red, these beetles use specialized photoreceptors to detect it and even show a strong preference for red flowers like poppies and anemones. This breakthrough challenges long-standing assumptions about how flower colors evolved and opens a new path for studying how pollinators influence plant traits over time.

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For centuries, it has been believed that insects are unable to perceive the color red. While this limitation may have seemed absolute, a recent study has revealed that two species of beetles from the eastern Mediterranean region possess the ability to see a spectrum that includes red light. This groundbreaking discovery challenges our understanding of insect vision and opens up new avenues for research in the fields of ecology and evolution.

The researchers behind this breakthrough are an international team led by Dr. Johannes Spaethe from the University of Würzburg in Germany, along with colleagues from Slovenia and the Netherlands. They used a combination of electrophysiology, behavioral experiments, and color trapping to demonstrate that Pygopleurus chrysonotus and Pygopleurus syriacus, both members of the Glaphyridae family, are capable of perceiving deep red light in addition to ultraviolet, blue, and green light.

These beetles have four types of photoreceptors in their retinas that respond to different wavelengths of light, including the elusive red spectrum. The scientists conducted field experiments to observe how these beetles use true color vision to identify targets and distinguish between colors. Their results show a clear preference for red hues among the two species.

This discovery not only shatters our long-held assumption about insect color perception but also presents a new model system for studying the visual ecology of beetles and the evolution of flower signals. The Glaphyrid family, which comprises three genera with varying preferences for flower colors, offers a promising avenue for further research in this area.

The study’s findings have significant implications for our understanding of how pollinators adapt to their environments. Traditionally, it was believed that flower colors evolved to match the visual capabilities of pollinators over time. However, the researchers suggest that this scenario might not be universal and propose an alternative: that the visual systems of some pollinators, such as these Mediterranean beetles, may actually adapt to the diversity of flower colors in their environments.

This paradigm shift has sparked new questions about the ecology and evolution of pollinator-plant interactions. The study’s authors encourage further research into this area, highlighting the complex relationships between species that have evolved over millions of years. As we continue to unravel the mysteries of insect vision and behavior, we may discover even more surprising abilities among these tiny creatures that captivate us with their intricate social structures and incredible adaptability.

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Animals

“Revolutionizing Agriculture: Uncovering the Hidden Secrets of a Tiny Wasp’s Reproductive Trick”

Aphid-hunting wasps can reproduce with or without sex, challenging previous assumptions. This unique flexibility could boost sustainable pest control if its hidden drawbacks can be managed.

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The rewritten article is as follows:

Revolutionizing Agriculture: Uncovering the Hidden Secrets of a Tiny Wasp’s Reproductive Trick

Scientists have made a groundbreaking discovery that could transform global agriculture. Dr Rebecca Boulton, from the University of Stirling, has shown for the first time that Lysiphlebus fabarum, a tiny species of wasp, can reproduce with or without a mate. This finding challenges previous assumptions and opens up new possibilities for improving biological pest control.

Lysiphlebus fabarum is known to have both sexual and asexual populations, but until now, it was not known whether asexual females could reproduce sexually with males. The discovery has significant implications for agriculture, as the wasps naturally target aphids, which are major pests in crops worldwide.

Many species of parasitoid wasps are mass-reared and released as a natural alternative to pesticides because they lay their eggs on or in other species, many of which are pests, before the developing wasp larvae consumes their host, killing it in the process. Asexual reproduction makes it easy to produce large numbers of wasps, but these need to be suitably adapted to local pests and environments to be effective.

Developing an understanding of how Lysiphlebus fabarum reproduce could help boost genetic diversity in commercially reared lines, making future biocontrol agents more resilient and better adapted. Dr Boulton’s study has shown that facultative sex, where females can choose to reproduce with or without a mate, may have hidden costs, such as reduced female reproductive success.

The findings of Dr Boulton’s study could be used to develop new biocontrol agents that can be used to control aphids throughout the world, harnessing their natural reproductive behavior to ensure that they are adapted to the hosts and environments specific to different regions.

Dr Boulton reared the wasps in a controlled environment facility at the University and had initially planned to put asexual and sexual wasps together, in direct competition, to see which parasitized the most aphids. However, she realized the female asexual wasps were behaving unexpectedly and were mating with males from the sexual population.

This led to a change in strategy, as she started to record this behavior in more detail, before carrying out wasp paternity testing to see whether the asexual females were just mating or actually fertilizing eggs. Once it confirmed that the asexual wasps were engaging in facultative sex, Dr Boulton carried out an experiment where asexual females either mated or didn’t, before examining how successful these females, and their daughters, were at parasitizing aphids.

The study involved putting around 300 wasps, each around 1mm long, in their own petri dish with a colony of sap-sucking aphids and counting how many were parasitized. Lysiphlebus fabarum wasps only live a few days but spend two weeks developing as larvae on their hosts.

The entire experiment, which was carried out across two generations of wasps, took six weeks to run. On completion, Dr Boulton extracted DNA from the wasps and sent it to be paternity tested. When the results were returned, it was clear that the asexual wasps which mated were, in most cases, reproducing sexually as their offspring had bits of DNA that were only found in the fathers.

The study, “Is facultative sex the best of both worlds in the parasitoid wasp Lysiphlebus fabarum?” is published in the Royal Society of Open Science. It was funded through a BBSRC Discovery fellowship.

Professor Anne Ferguson-Smith, Executive Chair of BBSRC, said: “This is an exciting example of how BBSRC’s Discovery Fellowships are helping talented early career researchers explore fundamental questions in bioscience with real-world relevance. Dr Boulton’s work opens up promising avenues for more sustainable pest control.”

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