Connect with us
We’re experimenting with AI-generated content to help deliver information faster and more efficiently.
While we try to keep things accurate, this content is part of an ongoing experiment and may not always be reliable.
Please double-check important details — we’re not responsible for how the information is used.

Cancer

“Visualizing Cell Communities with NicheCompass: A Breakthrough in Personalized Cancer Treatment”

An openly available generative AI tool can interpret millions of cells in human tissues in hours, revealing new insights and allowing researchers and clinicians to ask questions about conditions such as cancer.

Avatar photo

Published

on

The revolutionary AI tool, NicheCompass, has been developed by researchers at the Wellcome Sanger Institute, the Institute of AI for Health at Helmholtz Munich, and the University of Würzburg. This groundbreaking technology leverages generative AI to create a visual database that combines spatial genomic data on cell types, their locations, and how they communicate with each other.

NicheCompass is capable of analyzing millions of cells from a patient sample in just one hour, predicting molecular changes in the tissue, and pinpointing where personalized treatments could be most effective for conditions such as cancer. The AI tool can identify transcriptional changes that might be useful to target in new treatments, highlighting new possible avenues for personalized medicine.

The researchers have demonstrated NicheCompass’s effectiveness on breast and lung cancer patients, showing how it can uncover tissue changes across different individuals. They have also applied the network to a mouse brain spatial atlas with 8.4 million cells, rapidly identifying brain sections and creating a visual resource of the entire organ.

NicheCompass has significant implications for personalized therapy plans, enabling clinicians to input patient data and receive in-depth information about individual conditions. This will help guide clinical decisions, ultimately contributing to better health outcomes.

According to Dr. Carlos Talavera-López, co-senior author at the University of Würzburg, “Using NicheCompass, we were able to see the differences in how immune cells interact with lung cancer tumours in patients. This real-world application not only uncovered new information that adds to our collective understanding about cancer, it also highlighted one patient whose cancer interacted with the immune system differently.”

Dr. Mohammad Lotfollahi, co-senior author at the Wellcome Sanger Institute, emphasized the importance of NicheCompass in interpreting cell-to-cell communication and answering questions directly impacting patient lives. “Cell-to-cell communication is similar to how people communicate with their social networks,” he explained. “Cells might use different features to communicate with their local area, creating communities or networks. NicheCompass is the first AI model of its kind that can interpret these networks and answer questions that could directly impact patient lives.”

NicheCompass represents a significant leap in interdisciplinary research, harnessing the power of AI while offering interpretability for researchers and clinicians to ask questions about their data and better understand health conditions. As Dr. Sebastian Birk, first author at the Institute of AI for Health, Helmholtz Munich, and the Wellcome Sanger Institute, noted, “Having a huge amount of data about the human body is crucial to finding new ways to understand, prevent, and treat disease. However, we also need tools that allow us to access all the benefits this information could provide.”

Cancer

Unlocking the Potential of Estrogen-related Receptors in Treating Metabolic and Muscular Disorders

Researchers confirm and explore the role of estrogen-related receptors in regulating energy production in muscle cells during exercise. The findings indicate that developing a drug to boost estrogen-related receptors could be a powerful way to restore energy supplies in people with metabolic disorders, such as muscular dystrophy.

Avatar photo

Published

on

Estrogen-related receptors could be the key to repairing energy metabolism and muscle fatigue. Mitochondrial dysfunction is difficult to treat, but recent findings from the Salk Institute show that a group of proteins called estrogen-related receptors could be a new and effective therapeutic target. These receptors play an important role in muscle cell metabolism, especially during exercise.

When our muscles need more energy, estrogen-related receptors can increase the number of mitochondria and enhance their energetic output within muscle cells. Developing a drug to boost these receptors could be a powerful way to restore energy supplies in people with metabolic disorders, such as muscular dystrophy.

Estrogen-related receptors are one branch of a family of proteins called nuclear hormone receptors. These receptors attach themselves to our DNA and control which genes get turned “on” or “off.” In the 1980s, researchers led by Ronald Evans discovered this family of proteins and recognized their role in energy metabolism. Now, they’ve learned that estrogen-related receptors are indispensable drivers of mitochondrial growth and activity in our muscles.

Exercise triggers mitochondrial biogenesis, wherein a cell increases the number of its mitochondria to produce more fuel. But exercising is difficult for people with muscular and metabolic disorders, so scientists have been looking for another way to stimulate this process. Estrogen-related receptors play a crucial role in this process, particularly during exercise.

Researchers deleted three different forms of estrogen-related receptors (alpha, beta, and gamma) in muscle tissues of mice and examined the resulting effects. They found that while the most abundant type was the alpha receptor, loss of just this one receptor had mild impacts on muscle tissue. However, if both alpha and gamma types were deleted, this led to serious impairments in muscle mitochondrial activity.

Exercise-induced mitochondrial biogenesis was driven by another protein called PGC1α, which relies on partner proteins to get the job done. Unlike PGC1α, estrogen-related receptors can bind directly to mitochondrial energetic genes and turn them “on,” making it a promising target for improving muscle’s mitochondrial performance.

“Our findings suggest that activating estrogen-related receptors could not only help fuel people’s muscles, but it could also have other beneficial effects across the whole body,” says first author Weiwei Fan. “Improving mitochondrial function and energy metabolism could help strengthen many different organ systems, including the brain and heart.”

Understanding how estrogen-related receptors function in muscle cells creates new opportunities to treat all parts of the body affected by mitochondrial dysfunction. Future research will continue to explore the function and regulation of both alpha- and gamma-type receptors, which may lead to other potential therapeutic targets.

The work was supported by several organizations, including the National Institutes of Health and the Larry L. Hillblom Foundation, Inc.

Continue Reading

Cancer

Fat-Rich Fluid Identified as Key Player in Immune Failure in Ovarian Cancer

New research has uncovered how lipid-rich fluid in the abdomen, known as ascites, plays a central role in weakening the body’s immune response in advanced ovarian cancer. The findings offer new insights into immune suppression in ovarian cancer and open promising avenues for future immunotherapy approaches. Over 70% of patients with ovarian cancer are diagnosed at an advanced stage, often presenting with large volumes of ascites. This ascites fluid not only supports the spread of cancer throughout the abdominal cavity but also significantly impairs the body’s immune defenses. Understanding how ascites affects the immune system is important for developing better treatments that use the immune system to fight cancer.

Avatar photo

Published

on

In a groundbreaking study led by Irish researchers, scientists have uncovered how a lipid-rich fluid in the abdomen, known as ascites, contributes to immune failure in advanced ovarian cancer. The findings shed new light on immune suppression in ovarian cancer and pave the way for innovative immunotherapy approaches.

According to the research, more than 70% of patients with ovarian cancer are diagnosed at an advanced stage, often accompanied by significant volumes of ascites fluid. This fluid not only supports the spread of cancer throughout the abdominal cavity but also severely impairs the body’s immune defenses. Understanding how ascites affects the immune system is crucial for developing better treatments that harness the power of the immune system to combat cancer.

Researchers from Trinity College Dublin and University College Dublin explored how ascites disrupts immune cell function, focusing on natural killer (NK) cells and T cells, key players in eliminating tumors. By analyzing the contents of ascites fluid from ovarian cancer patients, the team identified a group of fat molecules called phospholipids as primary drivers of this immune dysfunction.

Dr. Karen Slattery, Research Fellow at the Trinity Translational Medicine Institute, is the first author of the research article published in Science Immunology. She stated: “We discovered that these lipids interfere with NK cell metabolism and suppress their ability to kill cancer cells. Crucially, we found that blocking the uptake of these phospholipids into NK cells using a specific receptor blocker can restore their anti-tumour activity, which offers a compelling new target for therapeutic intervention.”

Prof. Lydia Lynch, formerly based in Trinity and now at Princeton University, is the senior author of the research article. She emphasized: “This study marks a significant advancement in ovarian cancer research, identifying a new mechanism underpinning immune failure and laying the foundation for new therapies that could restore immune function in these patients. By targeting the fat-induced suppression of immune cells, future treatments could empower the body’s own immune defenses to fight back and improve outcomes for ovarian cancer patients.”

Continue Reading

Brain Tumor

Early-Onset Cancers on the Rise: A Growing Concern for Public Health

Researchers have completed a comprehensive analysis of cancer statistics for different age groups in the United States and found that from 2010 through 2019, the incidence of 14 cancer types increased among people under age 50.

Avatar photo

Published

on

The National Institutes of Health (NIH) has conducted a comprehensive analysis of cancer statistics for different age groups in the United States. The study reveals that between 2010 and 2019, the incidence rates of 14 cancer types increased among people under the age of 50. These cancer types include breast cancer, colorectal cancer, kidney cancer, uterine cancer, and others.

Lead investigator Meredith Shiels, Ph.D., notes that this study provides a starting point for understanding which cancers are increasing among individuals under 50. The causes of these increases are likely to be specific to each type of cancer, including changes in cancer risk factors, screening or detection methods, and clinical diagnosis or coding.

The researchers analyzed incidence and mortality trends for 33 cancer types using data from the Centers for Disease Control and Prevention’s United States Cancer Statistics database and national death certificate data. They examined six age groups: three early-onset (15-29 years, 20-39 years, and 40-49 years) and three older-onset (50-59 years, 60-69 years, and 70-79 years).

The study found that the incidence of nine cancer types increased in at least one of the younger age groups, including female breast, colorectal, kidney, testicular, uterine, pancreatic, and three types of lymphoma. Although death rates did not increase in early-onset age groups for most of these cancers, researchers observed concerning increases in rates of colorectal and uterine cancer deaths at younger ages.

Only five cancer types increased in incidence among one of the younger age groups but not among any of the older age groups: melanoma, cervical cancer, stomach cancer, myeloma, and cancers of the bones and joints.

To better understand the magnitude of these increases, researchers estimated how many additional people were diagnosed with early-onset cancers in 2019 compared to expected diagnoses based on rates in 2010. The largest absolute increases were seen for female breast cancer (4,800 additional cases), followed by colorectal (2,100), kidney (1,800), uterine (1,200), and pancreatic cancers (500).

The researchers speculate that risk factors such as increasing obesity may have contributed to some of the increases in early-onset cancer incidence. Changes in cancer screening guidelines, advances in imaging technologies, and increased surveillance of high-risk individuals may also have led to earlier cancer diagnoses, potentially contributing to rising rates among younger age groups.

To more fully understand and address these increasing rates, future studies should examine trends in early-onset cancers across demographics and geography in the U.S. and internationally. Additional research is also needed to better understand the risk factors that are particularly relevant to younger people.

Continue Reading

Trending