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Chronic Illness

Unraveling Memory Formation: A Computational Model Reveals New Insights into Protein Structures at Synapses

Complex protein interactions at synapses are essential for memory formation in our brains, but the mechanisms behind these processes remain poorly understood. Now, researchers have developed a computational model revealing new insights into the unique droplet-inside-droplet structures that memory-related proteins form at synapses. They discovered that the shape characteristics of a memory-related protein are crucial for the formation of these structures, which could shed light on the nature of various neurological disorders.

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Memory formation is one of the brain’s most fundamental and complex functions, yet the microscopic mechanisms behind it remain poorly understood. Recent research has highlighted the importance of biochemical reactions occurring at postsynaptic densities – specialized areas where neurons connect and communicate. These tiny junctions between brain cells are now thought to be crucial sites where proteins need to organize in specific ways to facilitate learning and memory formation.

A 2021 study revealed that memory-related proteins can bind together to form droplet-like structures at postsynaptic densities, which scientists believe may be fundamental to how our brains create lasting memories. However, understanding exactly how and why such complex protein arrangements form has remained a significant challenge in neuroscience.

Against this backdrop, a research team led by Researcher Vikas Pandey from the International Center for Brain Science (ICBS), Fujita Health University, Japan, has developed an innovative computational model that reproduces these intricate protein structures. Their paper, published online in Cell Reports on April 07, 2025, explores the mechanisms behind the formation of multilayered protein condensates.

The researchers focused on four proteins found at synapses, with special attention to Ca²⁺/calmodulin-dependent protein kinase II (CaMKII) – a protein particularly abundant in postsynaptic densities. Using computational modeling techniques, they simulated how these proteins interact and organize themselves under various conditions. Their model successfully reproduced the formation of the above-mentioned “droplet-inside-droplet” structures observed in earlier experiments.

Through simulations and detailed analyses of the physical forces and chemical interactions involved, the research team shed light on a process called liquid-liquid phase separation (LLPS); it involves proteins spontaneously organizing into condensates without membranes that sometimes resemble the organelles found inside cells. Crucially, the researchers found that the distinctive “droplet-inside-droplet” structure appears as a result of competitive binding between the proteins and is significantly influenced by the shape of CaMKII, specifically its high valency (number of binding sites) and short linker length.

These findings could pave the way toward a better understanding of the possible mechanisms of memory formation in humans. However, the long-term implications of this research extend well beyond basic neuroscience. Defects in synapse formation have been associated with numerous neurological and mental health conditions, including schizophrenia, autism spectrum disorders, Down syndrome, and Rett syndrome.

“Our results revealed new structure-function relationships between proteins at synapses,” said Dr. Pandey. “We hope that our findings will contribute to the development of novel therapeutic strategies for these devastating diseases.”

The project received funding from various organizations, including the Core Research for Evolutional Science and Technology (CREST), the Japan Science and Technology Agency (JST), JSPS KAKENHI, Kobayashi foundation, ISHIZUE2024 of Kyoto University, Grant-in-Aid for Scientific Research JP18H05434, and others.

References:

* Pandey, V., et al. (2025). Unraveling memory formation: A computational model reveals new insights into protein structures at synapses. Cell Reports.
* Japanese Ministry of Education, Culture, Sports, Science, and Technology (MEXT). (n.d.). Research Grants JP18H05434 and JP20K21462.

Allergy

The Resilient Enemy: Why Asthma Symptoms Persist Despite Powerful Drugs

Biological drugs have been a game-changer for people with severe asthma, helping them breathe easier and live more comfortably. But researchers at Karolinska Institutet have uncovered a surprising twist: while these treatments ease symptoms, they may not fully eliminate the immune cells that drive inflammation. In fact, some of these cells actually increase during treatment, suggesting the medication is managing symptoms without targeting the root cause. This could explain why asthma often returns when the drugs are stopped, raising questions about how long-term these treatments should be and whether we’re truly solving the underlying problem.

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Asthma has long been a formidable foe for many people, causing symptoms that can range from mild discomfort to life-threatening attacks. While powerful biological drugs have significantly improved the lives of those with severe asthma, a recent study has shed light on why these symptoms often return despite treatment.

Biological drugs, or biologics, have become a crucial tool in managing severe asthma by helping patients keep their symptoms under control. However, researchers at Karolinska Institutet in Sweden discovered that certain immune cells, which play a significant role in asthma inflammation, do not disappear during treatment as previously thought. Instead, these inflammatory cells increase in number.

This finding suggests that biologics might not address the root cause of asthma, but rather manage its symptoms. As such, continued treatment may be necessary to keep the disease under control. This is particularly concerning considering that little is still known about the long-term effects of biologics like mepolizumab and dupilumab, which have been prescribed to asthmatics for less than ten years.

The study analyzed blood samples from 40 patients before and during treatment, using advanced methods such as flow cytometry and single-cell sequencing. Researchers were surprised to find that the levels of inflammatory cells in these patients increased rather than decreased. This could explain why inflammation of the airways often returns when the treatment is tapered or discontinued.

It is essential for researchers and medical professionals to understand the long-term immunological effects of biologics, as this knowledge can lead to more effective treatments and better outcomes for patients with severe asthma. The next stage of the study will involve analyzing samples from patients with a long treatment history and studying lung tissue to see how immune cells are affected in the airways.

The findings of this study have significant implications for the management and treatment of asthma, highlighting the need for continued research into the effects of biologics on the immune system.

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Animal Learning and Intelligence

“Breathe with Identity: The Surprising Link Between Your Breath and You”

Scientists have discovered that your breathing pattern is as unique as a fingerprint and it may reveal more than just your identity. Using a 24-hour wearable device, researchers achieved nearly 97% accuracy in identifying people based solely on how they breathe through their nose. Even more intriguingly, these respiratory signatures correlated with traits like anxiety levels, sleep cycles, and body mass index. The findings suggest that breathing isn t just a passive process it might actively shape our mental and emotional well-being, opening up the possibility of using breath training for diagnosis and treatment.

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Now, let me rewrite the article to make it more accessible and engaging for a general audience:

Breathe with Identity: The Surprising Link Between Your Breath and You

Imagine if your breath could reveal not only your health but also your identity. Sounds like science fiction? Think again! A recent study published in the journal Current Biology has shown that scientists can identify individuals based solely on their breathing patterns with an astonishing 96.8% accuracy.

The research was led by Noam Sobel and Timna Soroka from the Weizmann Institute of Science, Israel. They were intrigued by the connection between our brain and breathing, which is processed during inhalation in mammals. Since every brain is unique, wouldn’t each person’s breathing pattern reflect that?

To test this idea, the team developed a lightweight wearable device that tracks nasal airflow continuously for 24 hours using soft tubes placed under the nostrils. This innovative approach revealed that people’s respiratory patterns are as distinctive as fingerprints – and just as reliable.

In an experiment with 100 healthy young adults, the researchers asked them to go about their daily lives while wearing the device. The collected data allowed them to identify individuals with high accuracy, rivaling the precision of some voice recognition technologies. What’s more, the study found that these respiratory “fingerprints” correlated with various aspects of a person’s life, such as:

* Body mass index (BMI)
* Sleep-wake cycle
* Levels of depression and anxiety
* Behavioral traits

For instance, participants who scored relatively higher on anxiety questionnaires had shorter inhales and more variability in the pauses between breaths during sleep. This suggests that long-term nasal airflow monitoring may serve as a window into physical and emotional well-being.

But here’s the really interesting part: what if the way we breathe affects our mental and emotional states? Could changing our breathing patterns actually change those conditions? The researchers are already investigating this possibility, aiming to develop a more discreet and comfortable version of the device for everyday use.

Sobel notes, “We intuitively assume that how depressed or anxious you are changes the way you breathe. But it might be the other way around. Perhaps the way you breathe makes you anxious or depressed. If that’s true, we might be able to change the way you breathe to change those conditions.”

This study opens up exciting possibilities for using respiratory monitoring as a tool for improving mental and emotional well-being. And who knows? Maybe one day, your breath will be the key to unlocking a healthier, happier you!

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Chronic Illness

Groundbreaking Supplement Reverses Premature Aging in Landmark Human Trial

A rare genetic disorder called Werner syndrome causes premature aging and devastating health complications from an early age, yet treatment options have been lacking. New hope emerges from Chiba University, where researchers conducted the first clinical trial using nicotinamide riboside (NR), a precursor to NAD+ that s been linked to anti-aging effects. The double-blind trial revealed that NR not only safely boosted NAD+ levels but also improved cardiovascular health, reduced skin ulcers, and helped protect kidney function in patients.

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The article begins by introducing Werner syndrome (WS), a rare genetic disorder causing accelerated aging. Patients develop age-related conditions from their twenties, including gray hair, hair loss, cataracts, diabetes, severe skin ulcers, and early death from cardiovascular diseases or cancer. The condition affects approximately nine per million people in Japan and lacks effective treatment options.

Interestingly, a study found that patients with WS model systems and patients had decreased levels of nicotinamide adenine dinucleotide (NAD+), crucial for cellular energy production, DNA repair, and various metabolic processes. This suggested that NAD+ depletion may contribute to the progression of the disease. While direct NAD+ supplementation isn’t feasible in mammals, using its precursor – nicotinamide riboside (NR) from Niagen Bioscience – has shown promising results in animal studies.

A recent study by a research team led by Associate Professor Masaya Koshizaka conducted the world’s first rigorous clinical trial of NR in patients with WS. The paper was co-authored by University President Koutaro Yokote, Assistant Professor Hisaya Kato, Associate Professor Yoshiro Maezawa, and Assistant Professor Mayumi Shoji, all from Chiba University, along with Affiliate Professor Vilhelm Bohr from the University of Copenhagen, Denmark.

The study involved a randomized, double-blind, placebo-controlled trial to evaluate the safety and effectiveness of NR supplementation. Researchers tracked NAD+ blood levels, skin ulcer size, arterial stiffness, and kidney function. NR supplementation significantly increased NAD+ levels in patient blood compared to placebo, improved arterial stiffness, reduced skin ulcer area, and appeared to slow the progression of kidney dysfunction – all without any serious side effects.

The results suggest that NR may help protect kidney function, addressing another serious complication of WS. Dr. Yasmeen Nkrumah-Elie commented on the study, stating it represents a significant step forward in understanding how NAD+ restoration with NR may help address the underlying biology of WS.

Dr. Koshizaka concluded by saying that their findings suggest NR could serve as a valuable treatment option for two major symptoms – arteriosclerosis and skin ulcers – as well as for preventing kidney function decline. The results are particularly significant given that untreatable skin ulcers affect well over 70% of patients with WS, often leading to amputation, while cardiovascular disease remains a leading cause of early mortality in this population.

Larger studies are needed to extend these findings, but the pioneering research offers new hope for patients with WS who have long lacked effective treatment options. Beyond its immediate implications for this rare condition, the study also provides valuable insights into the biology of aging and potential interventions to address age-related decline more broadly.

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